autism_mri#
You can see the full contents of this project on GitHub.
autism_mri#
Repo to do LabelBuddy annotations of a corpus of Autism MRI literature
Papers#
How the papers were obtained#
We ran the following bash command:
bash pubget run -q "Brain Volume MRI 2022 Autism" pubget/test --labelbuddy --n_jobs 4
Where the full papers are stored#
The full pubget output is stored on OSF: https://osf.io/meya4.
Annotations#
File(s) being annotated:#
/projects/autism_mri/documents/documents_00001.jsonl
corresponding file in the pubget output:
query_6b2c09de69c29c29626f794757ea4c68/subset_allArticles_labelbuddyData/documents_00001.jsonl
Annotation labels:#
FieldStrength:
<description of label1>
Diagnosis:
<description of label2>
N_Total:
N_Total_Male:
N_Total_Female
N_Patients
N_Controls
N_Controls_Male
N_Controls_Female
N_Patients_Male
N_Patients_Female
Age_Mean
Age_Min
Age_Max
Scanner
AnalysisTool
MRI_Modality
Labels found in other projects as well:#
<label2>
Instructions for annotators#
<description>
Labels in this project#
FieldStrength (3 docs)
Example annotations:
N_Patients (3 docs)
Example annotations:
N_Controls (3 docs)
Example annotations:
Diagnosis (2 docs)
Example annotations:
N_Controls_Male (2 docs)
Example annotations:
Age_Min (2 docs)
Example annotations:
Age_Max (2 docs)
Example annotations:
Scanner (2 docs)
Example annotations:
AnalysisTool (2 docs)
Example annotations:
healthy (1 docs)
Example annotations:
patients (1 docs)
Example annotations:
female (1 docs)
Example annotations:
male (1 docs)
Example annotations:
count (1 docs)
Example annotations:
age mean (1 docs)
Example annotations:
diagnosis (1 docs)
Example annotations:
N_Total (1 docs)
Example annotations:
N_Controls_Female (1 docs)
Example annotations:
N_Patients_Male (1 docs)
Example annotations:
N_Patients_Female (1 docs)
Example annotations:
MRI_Modality (1 docs)
Example annotations:
N_Total_Male (0 docs)
(No annotations with this label in the current project)
N_Total_Female (0 docs)
(No annotations with this label in the current project)
Age_Mean (0 docs)
(No annotations with this label in the current project)