neuro-meta-analysis-tables#
You can see the full contents of this project on GitHub.
<Project Name>#
<1-2 sentences describing the project>
Papers#
How the papers were obtained#
Typically with pubget.
We recommend invoking pubget with the --query_file option, and storing a copy of the query file in the project’s directory, or including a copy in the README.md.
<description>
Where the full papers are stored#
Typically on OSF.
Please also add a documents/datasets.json file containing the URL where the full pubget dataset can be downloaded, that looks like:
[ { "url": "https://osf.io/download/<...>/" } ]
<description>
Annotations#
File(s) being annotated:#
/projects/<project_name>/documents/<documents_file1_name>.jsonlcorresponding file in the pubget output:
<pubget_folder_name>/subset_allArticles_labelbuddyData/<documents_file1_name>.jsonl
/projects/<project_name>/documents/<documents_file2_name>.jsonlcorresponding file in the pubget output:
<pubget_folder_name>/subset_allArticles_labelbuddyData/<documents_file2_name>.jsonl
Annotation labels:#
<label1>: <description of label1><label2>: <description of label2>
Labels found in other projects as well:#
<label2>
Instructions for annotators#
<description>
Labels in this project#
doi - included (67 docs)
Example annotations:
… Reference ... Matching
0 Autism Spectrum Disorders ... Autism Spectrum Disorders
1 Hall et al, 2010 ??? ... Gender, age, non-verbal IQ
2 Monk et al, 2010 ??? ... Gender, age, handedness, IQ
3 …
…trum Disorders ... Autism Spectrum Disorders
1 Hall et al, 2010 ??? ... Gender, age, non-verbal IQ
2 Monk et al, 2010 ??? ... Gender, age, handedness, IQ
3 Deeley et al, 2007 ??? ... Gender, age, verbal IQ
4 …
… et al, 2010 ??? ... Gender, age, non-verbal IQ
2 Monk et al, 2010 ??? ... Gender, age, handedness, IQ
3 Deeley et al, 2007 ??? ... Gender, age, verbal IQ
4 Ashwin et al, 2007 ??? ... Gender, age, handedness
5 Cri…
… et al, 2010 ??? ... Gender, age, handedness, IQ
3 Deeley et al, 2007 ??? ... Gender, age, verbal IQ
4 Ashwin et al, 2007 ??? ... Gender, age, handedness
5 Critchley et al, 2000 ??? ... Gender, age, IQ
6 …
…ley et al, 2007 ??? ... Gender, age, verbal IQ
4 Ashwin et al, 2007 ??? ... Gender, age, handedness
5 Critchley et al, 2000 ??? ... Gender, age, IQ
6 Schizophrenia ... Schizophrenia
7 …
… ... a) Comparison of Different Needling Depths
1 Li et al. 2000 ... NSD
2 MacPherson et al. 2008 ... NSD
3 Zhang et al. 2007 ... NSD
4 …
… NSD
3 Zhang et al. 2007 ... NSD
4 Wu et al. 1999 ... 1)MA (2 cm)>MA (1 mm): Bil. Ant. CingC (rostra...
5 b) Comparison of Electro-acupuncture vs. Manua... ... b) Comparison of Electro-acupuncture vs. Manua...
6 …
… 1)MA (2 cm)>MA (1 mm): Bil. Ant. CingC (rostra...
5 b) Comparison of Electro-acupuncture vs. Manua... ... b) Comparison of Electro-acupuncture vs. Manua...
6 Kong et al. 2002 ... 1) MA>EA: Con. STG and Put/IN, post. Cing, STG...
7 Li et al. 2003 ... MA>2 EA groups: Bil. Cun(BA18), TTG (BA41), MF...
8 …
…) Comparison of Electro-acupuncture vs. Manua...
6 Kong et al. 2002 ... 1) MA>EA: Con. STG and Put/IN, post. Cing, STG...
7 Li et al. 2003 ... MA>2 EA groups: Bil. Cun(BA18), TTG (BA41), MF...
8 Napadow et al. 2005 ... EA>MA: septal area
9 c) Comparison o…
….. 1) MA>EA: Con. STG and Put/IN, post. Cing, STG...
7 Li et al. 2003 ... MA>2 EA groups: Bil. Cun(BA18), TTG (BA41), MF...
8 Napadow et al. 2005 ... EA>MA: septal area
9 c) Comparison of Different Frequencies of Elec... ... c) Comparison of Different Frequencies of Elec...
10 …
no table with included papers (15 docs)
Example annotations:
ROI abbrev. ... Supporting publications (ALE coord. within 20 mm)???
0 mTBI > Control ... mTBI > Control
1 CBT ... Wi2010, Sl2…
Unnamed: 0 Go/No-Go Other Chi Squared value P-value
0 A A A A A
1 What 17 39 NaN NaN
2 vs. NaN NaN 10.…
Area ... Center-of-mass coordinate (x, y, z)
0 Dorsomedial prefrontal cortex(dmPFC) ... -1.6, 54.2, 27.6
1 Ventromedial prefrontal cortex(vmPFC) ... 1.9, 47.2, -14.9
2 R occipito-tempo…
MAG 1 MAG 1.1 ... MAG 6 MAG 6.1
0 NS term corr. ... NS term corr.
1 Motion 0.555 ... visual 0.431
2 Body 0.451 ... …
Brain regions (BA) ... MNI coordinates.15
0 Unnamed: 0_level_1 ... Right hemisphere
1 Unnamed: 0_level_2 ... Standard deviation
2 Unnamed: 0_level_3 ... …
Diagnostic coding ... Healthy individuals.2
0 Diagnostic coding ... Male sex (%)
1 Schizophrenia ... 58 (14)
2 Major depressive disorder ... …
Cluster no. ... No. of contributing experiments.1
0 Unnamed: 0_level_1 ... %
1 RS in perceptual priming tasks (n = 27) ... RS in per…
Local maximum ... Heterogeneity
0 Region ... Heterogeneity
1 MDD vs. HCs (MDD > HCs) ..…
Cluster # Cluster size (mm3) ... y z
0 2.0 13,216 ... 56 28
1 8.0 4,800 ... 28 40
2 10.0 2,432 ... 4 46
3 NaN …
Region Brodmann x y z k Max Mean
0 Overall in-group > out-group NaN NaN NaN NaN NaN NaN NaN
1 LH anterior insula (cluster) 13.0 −36 15.0 10.0 260 0.33 0.25
2…
included studies not in reference list (9 docs)
Example annotations:
Study ... Sample.4
0 Author ... Age (years).1
1 Blair ... 29.7 (2.28)
2 Blair ... 31.1 (6.37)
3 Evans ... 27.9 (10.6)
4 Goldin ... 32.1 (9.3)
5 Klumpp ... 33.6 (9.6)
6 Phan ... 26.6 (6.8)
7 Yoon ... 26.9 (6.16)…
Task First author Year ... Stop cue N subjects Foci
0 Selection Beudel 2009.0 ... NaN 16.0 5.0
1 NaN NaN NaN ... NaN 16.0 10.0
2 …
… Study N ... Loss Outcome MIDT type
0 Adcock et al. (???) 12 ... – A
1 Balodis et al. (???) 14 ... ✓ B
2 Beck et al. (2009) 19 ... – A
3 Behan et al. (???) 20 ... – E
4 Bjork et al. (???) 12 ... – A
5 …
Current Cannabis User Studies ... Tesla
0 Abdullaev et al., 2010 ... 3T
1 NaN ... 3T
2 Smith et al., 2011 ... …
Author, year ... Foci
0 Baumgartner, 2012 ... 8
1 Bellucci, 2016 ... 6
2 Buckholtz, 2008 ... 11
3 Corradi-dell’Acqua, 2013 ... 2
4 Feng, 2016 ... 19
5 Guo, 2013 ... 20
6 Hu…
Author (year) ... Use of medication at the moment of brain scanning?
0 Gustin et al. (2011) ... Yes; CBZ; GBP; TCA; NSAID and/or PGB
1 DeSouza et al. (2013) ... Yes: CBZ; GBP; TCA; VP…
# ... Instructed or Natural Deception
0 1.0 ... Natural
1 NaN ... NaN
2 NaN ... NaN
3 NaN ... …
No. First author (year) ... Controls (M) Mean age (SD).1
0 1 Aderjan et al (2010) ... 15 (7) 28.8 (7.73)
1 2 Bogdanov et al (2019) ... 24 31.3
2 3 Chen et al (2015) ... 20 (6) 28.10 (5.9…
Article Sample ... fMRI.3 fMRI.4
0 First author, year N ... Hemi-sphere # of foci
1 Barch, 2016 105 ... Both 7
2 Birn, 2014 27 ... Both 6
3 Buchweitz, 2019 40 ... Both 1
4 Ca…
doi - excluded (3 docs)
Example annotations:
Year ... Inclusion in the meta-analysis or reason for exclusion
0 1999 ... Excluded—without coordinates
1 2003 ... Excluded—without the contrast of interest
2 2006 ... Excluded—without the contrast of interest
3…
Year ... Inclusion in the meta-analysis or reason for exclusion
0 1999 ... Excluded—without coordinates
1 2003 ... Excluded—without the contrast of interest
2 2006 ... Excluded—without the contrast of interest
3 2007 ... Included
4…
….. Excluded—without the contrast of interest
2 2006 ... Excluded—without the contrast of interest
3 2007 ... Included
4 2008 ... Excluded—without coordinates
5 2008 ... Included
6 2008 ... Included
7…
….. Included
6 2008 ... Included
7 2009 ... Included
8 2010 ... Excluded—without coordinates
9 2009 ... Included
10 2010 ... Included
1…
….. Excluded—without coordinates
9 2009 ... Included
10 2010 ... Included
11 2010 ... Excluded—without the contrast of interest
12 2010 ... Included
13 2010 ... Excluded—without the contrast of interest
1…
References ... Reason for exclusion from ALE analysis
0 Beall et al. (???) ... No other study has matching ROI to ROI in resu...
1 Perrin et al. (???) ... No other study used same measure of rsFC analysis
2 Wei et al. (???) ... No other study use…
References ... Reason for exclusion from ALE analysis
0 Beall et al. (???) ... No other study has matching ROI to ROI in resu...
1 Perrin et al. (???) ... No other study used same measure of rsFC analysis
2 Wei et al. (???) ... No other study used same measure of rsFC analysis
3 Cano et al. (???) ... No other study use…
…r exclusion from ALE analysis
0 Beall et al. (???) ... No other study has matching ROI to ROI in resu...
1 Perrin et al. (???) ... No other study used same measure of rsFC analysis
2 Wei et al. (???) ... No other study used same measure of rsFC analysis
3 Cano et al. (???) ... No other study used same seed for Seed-voxel r...
4 Leaver et al. (???) ... No other study ha…
… GTN is not analyzed with ALE
14 Qi et al. (???) ... Guidelines for combining different modality of...
15 Sun et al. (???) ... No other study has matching ROI to ROI in resu...
16 Wei et al. (???) ... No other study used similar mask
17 Wei et al. (???) ... No other study used same seed for Seed-voxel r...
[18 rows x 9 columns]
…ning different modality of...
15 Sun et al. (???) ... No other study has matching ROI to ROI in resu...
16 Wei et al. (???) ... No other study used similar mask
17 Wei et al. (???) ... No other study used same seed for Seed-voxel r...
[18 rows x 9 columns]